The airport has a single, small passenger terminal serving domestic and inter-island services with basic check-in and arrivals facilities. Airline counters, a security screening area and a small departures lounge are colocated; retail and dining are limited to kiosks and a cafe.

Because the terminal is small, transferring between landside and airside areas is straightforward on foot; no internal transfer systems are required.

Magong Airport is a short drive from Magong city; travel between the airport and town is typically 10-25 minutes depending on traffic and your exact destination. Ground transport is straightforward but more limited than at larger airports.

• Taxi / car: Taxis wait outside arrivals and are the most convenient option for most visitors; journey times into Magong are usually under 25 minutes.
• Bus: Local buses serve routes between the airport and parts of Magong, but frequencies can be limited - check timetables.
• Car rental: Rental desks are sometimes available; booking in advance is recommended, especially in peak season.
• Ride-share: Local ride-hailing may be available intermittently; taxis are more reliable.
• Driving / parking: Short-term parking is available; driving times to the main town centre are short.

Facilities suit a small island airport: essential services, a few food outlets and tourist information rather than extensive shopping or premium lounges.

• Lounges: No major airline lounges; seating is the main option in departures.
• Food & drink: Small cafe and kiosks serve snacks and drinks landside and airside; opening hours follow flight schedules.
• Wi‑Fi: Basic Wi‑Fi may be offered; check availability on arrival.
• Charging: Limited charging points in the seating areas.
• Luggage storage: Likely limited or unavailable; plan accordingly.
• Showers: Unlikely.
• Accessibility: Basic accessible facilities and assistance are normally available; contact your airline ahead of travel if you need help.

A number of hotels and guesthouses are located in Magong city a short drive from the airport; there are no major on-site airport hotels. For day-use rooms or naps, city hotels typically offer day rates and are reachable within 10-25 minutes by car.